Published in Nature Biotechnology, 2026
Recommended citation: Fei Y*, Wang P*, Zhang J*, Shan X, Cai Z, Ma J, Wang Y#, Zhang Q C#. Predicting small molecule–RNA interactions without RNA tertiary structures. Nature Biotechnology, 2026, Online.
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Published in Nucleic Acids Research, 2025
Recommended citation: Mu K*, Fei Y*,#, Xu Y, Zhang Q C#. RASP v2.0: an updated atlas for RNA structure probing data. Nucleic Acids Research, 53(D1): D211–D219, 2025.
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Published in Bioinformatics, 2023
Recommended citation: Feng Z, Feng J, Zhang B, Fei Y, Zhang, H, Huang J#. PhasiHunter: a robust phased siRNA regulatory cascade mining tool based on multiple reference sequences. Bioinformatics, 39(11): btad676, 2023.
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Published in Genomics, Proteomics & Bioinformatics, 2022
Recommended citation: Shi B*, An K*, Wang Y, Fei Y, Guo C, Zhang Q C, Yang Y, Tian X, Kan Q#. RNA Structural Dynamics Modulate EGFR-TKI Resistance Through Controlling YRDC Translation in NSCLC Cells. Genomics, Proteomics & Bioinformatics, 21(4): 850–865, 2023.
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Published in Nature Methods, 2022
Recommended citation: Zhang J*, Fei Y*, Sun L #, Zhang Q C#. Advances and opportunities in RNA structure experimental determination and computational modeling. Bioinformatics, 19(10): 1193–1207, 2022.
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Published in Journal of Experimental Botany, 2022
Recommended citation: Zhang B, Fei Y, Feng J, Zhu X, Wang R, Xiao H, Zhang H, Huang J#. RiceNCexp: a rice non-coding RNA co-expression atlas based on massive RNA-seq and small-RNA seq data. Journal of Experimental Botany, 73(18): 6068–6077, 2022.
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Published in RNA Biology, 2021
Recommended citation: Fei Y, Feng J, Wang R, Zhang B, Zhang H, Huang J#. PhasiRNAnalyzer: an integrated analyser for plant phased siRNA. RNA Biology, 18(11): 1622–1629, 2021.
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Published in EMBO Journal, 2021
Recommended citation: Wan G #, Bajaj L, Fields B, Dodson A E, Pagano D J, Fei Y, Kennedy S #. ZSP-1 is a Z Granule Surface Protein Required for Z Granule Fluidity and Germline Immortality in C. elegans. EMBO Journal, 40(3): e105612, 2021.
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Published in Genetics, 2020
Recommended citation: Wan G, Yan J, Fei Y, Pagano D J, Kennedy S#. A Conserved NRDE-2/MTR-4 Complex Mediates Nuclear RNAi in Caenorhabditis elegans. Genetics, 216(4): 1071-1085, 2020.
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Published in Nature, 2020
Recommended citation: Shukla A*, Yan J*, Pagano D J, Dodson A E, Fei Y, Gorham J, Seidman J G, Wickens M, Kennedy S#. poly(UG)-tailed RNAs in genome protection and epigenetic inheritance. Nature, 582(7811): 283–288, 2020.
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Published in Bioinformatics, 2019
Recommended citation: Fei Y, Mao Y, Shen C, Wang R, Zhang H, Huang J#. WPMIAS: Whole-degradome-based Plant MicroRNA-target Interaction Analysis Server. Bioinformatics, 36(6): 1937–1939, 2020.
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Published in BMC Genomics, 2018
Recommended citation: Wang R, Yang Z, Fei Y, Feng J, Zhu H, Huang F, Zhang H, Huang J#. Construction and analysis of degradome-dependent microRNA regulatory networks in soybean. BMC Genomics, 20(1): 534, 2019.
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Published in Bioinformatics, 2017
Recommended citation: Fei Y, Wang R, Li H, Liu S, Zhang H, Huang J#. DPMIND: degradome-based plant miRNA-target interaction and network database. Bioinformatics, 34(9): 1618–1620, 2018.
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